Convective mixing, mesoscale eddies and regenerated production sustain an above-average biological productivity in the North East Arabian Sea (NEAS) during the winter-spring transition period. Satellite-derived long-term data sets on Chlorophyll-a (Chl-a), Sea Surface Height Anomaly (SSHA), Sea Surface Temperature (SST) and Okubo-Weiss parameterization show existence of number of mesoscale eddies, propagating and non-propagating, that contribute to the regional production. The dominance of Eddy Kinetic Energy (EKE) over the Available Potential Energy (APE) in the core depth and the diameter (120km) of the observed eddy being wider than the Rossby Radius of Deformation (RRD, 55 km), it is suggested that the baroclinic instability is a possible mechanism for the eddy formation. Spatial variation in APE and its influences on the regional dynamics, including chemical and biological response are explained. In the non-eddy areas, where convective mixing is active, diatoms (96.74%) dominated than dinoflagellates (3.14%), and the Chl-a in the Cold Core Eddy (CCE) were two to three folds higher to non-eddy regions. The abundance increased from core (58,152 cells L−1) to periphery (5.95 × 105 cells L−1) where the water column is less dynamic. Extensive blooms of the dinoflagellate green Noctiluca (N. scintillans) contribute to the very high cell density in the periphery of the CCE, where the currents were comparatively weak, and water column was more stable. Active mixing is associated with diatom dominance, followed by Noctiluca when the mixing slackens, making use of the available nutrients and supported by regenerated production. The bloom dynamics is explained for pre-bloom, bloom and post-bloom conditions with measurements on nutrients and plankton assemblages. The Noctiluca bloom (mid-March) is succeeded by Trichodesmium (April–May), in the stratified nutrient depleted, abundant light environment and propagated southwards. Observed increasing trends in the SSHA over the period indicate strengthening of stratification and hence altered production patterns in the NEAS.